Developing a Taxonomy of Semantic Relations in the Oil Spill Domain of Knowledge Discovery

The paper presents the rationale, significance, method and procedure of building a taxonomy of semantic relations in the oil spill domain for supporting knowledge discovery through inference. Difficult problems during the development of the taxonomy are discussed and partial solutions are proposed. A preliminary functional evaluation of the taxonomy for supporting knowledge discovery was performed. The study proposes more research problems than solutions

An Event Relationship Model for Knowledge Organization and Visualization

An event is a specific occurrence involving participants, which is a typed, n-ary association of entities or other events, each identified as a participant in a specific semantic role in the event (Pyysalo et al. 2012; Linguistic Data Consortium 2005). Event types may vary across domains. Representing relationships between events can facilitate the understanding of knowledge in complex systems (such as economic systems, human body, social systems). In the simplest form, an event can be represented as Entity A -Relation- Entity B. This paper evaluates several knowledge organization and visualization models and tools, such as concept maps (Cmap), topic maps (Ontopia), network analysis models (Gephi), and ontology (Protégé), then proposes an event relationship model th at aims to integrate the strengths of these models, and can represent complex knowledge expressed in events and their relationships

Exploring research data management from a data user’s perspective

Current research data management practices focus more on data col-lecting, curating and sharing than on supporting data use and reuse. This re-search studies research data management from a data user’s perspective and aims to reveal what research data service features may support data reuse. Two data repositories – the TREC website and the GRI data repository – were stud-ied and compared from the perspectives of three types of data users (i.e., insid-ers, community users, and public users). The TREC website can support data reuse for insiders and community users, but not necessarily public users. The GRI repository can support data reuse for some insiders only. The findings have multiple implications for research data management

Classifying Attitude by Topic Aspect for English and Chinese Document Collections

The goal of this dissertation is to explore the design of tools to help users make sense of subjective information in English and Chinese by comparing attitudes on aspects of a topic in English and Chinese document collections. This involves two coupled challenges: topic aspect focus and attitude characterization. The topic aspect focus is specified by using information retrieval techniques to obtain documents on a topic that are of interest to a user and then allowing the user to designate a few segments of those documents to serve as examples for aspects that she wishes to see characterized. A novel feature of this work is that the examples can be drawn from documents in two languages (English and Chinese). A bilingual aspect classifier which applies monolingual and cross-language classification techniques is used to assemble automatically a large set of document segments on those same aspects. A test collection was designed for aspect classification by annotating consecutive sentences in documents from the Topic Detection and Tracking collections as aspect instances. Experiments show that classification effectiveness can often be increased by using training examples from both languages. Attitude characterization is achieved by classifiers which determine the subjectivity and polarity of document segments. Sentence attitude classification is the focus of the experiments in the dissertation because the best presently available test collection for Chinese attitude classification (the NTCIR-6 Chinese Opinion Analysis Pilot Task) is focused on sentence-level classification. A large Chinese sentiment lexicon was constructed by leveraging existing Chinese and English lexical resources, and an existing character-based approach for estimating the semantic orientation of other Chinese words was extended. A shallow linguistic analysis approach was adopted to classify the subjectivity and polarity of a sentence. Using the large sentiment lexicon with appropriate handling of negation, and leveraging sentence subjectivity density, sentence positivity and negativity, the resulting sentence attitude classifier was more effective than the best previously reported systems

Characterization of Diversity and Probiotic Efficiency of the Autochthonous Lactic Acid Bacteria in the Fermentation of Selected Raw Fruit and Vegetable Juices

The diversity of indigenous lactic acid bacteria (LAB) in fermented broccoli, cherry, ginger, white radish, and white-fleshed pitaya juices was analyzed using culture-independent and -dependent approaches. The major properties of selected probiotic strains, including dynamic variations in pH, viable cell counts, antibiotic resistance, bacterial adhesion to hydrophobic compounds, and survivability during simulated gastrointestinal transit, were investigated using broccoli as the fermentation substrate. In broccoli and ginger juices, the genus Lactobacillus occupied the dominant position (abundances of 79.0 and 30.3%, respectively); in cherry and radish juices, Weissella occupied the dominant position (abundances of 78.3 and 83.2%, respectively); and in pitaya juice, Streptococcus and Lactococcus occupied the dominant positions (52.2 and 37.0%, respectively). Leuconostoc mesenteroides, Weissella cibaria/soli/confusa, Enterococcus gallinarum/durans/hirae, Pediococcus pentosaceus, Bacillus coagulans, and Lactococcus garvieae/lactis subspecies were identified by partial 16S rRNA gene sequencing. In general, the selected autochthonous LAB isolates displayed no significant differences in comparison with commercial strains with regard to growth rates or acidification in fermented broccoli juice. Among all the isolates, L. mesenteroides B4-25 exhibited the highest antibiotic resistance profile (equal to that of L. plantarum CICC20265), and suitable adhesion properties (adhesion of 13.4 ± 5.2% ∼ 36.4 ± 3.2% and 21.6 ± 1.4% ∼ 69.6 ± 2.3% to ethyl acetate and xylene, respectively). Furthermore, P. pentosaceus Ca-4 and L. mesenteroides B-25 featured the highest survival rates (22.4 ± 2.6 and 21.2 ± 1.4%, respectively), after simulated gastrointestinal transit. These results indicated a high level of diversity among the autochthonous bacterial community in fermented fruit and vegetable juices, and demonstrated the potential of these candidate probiotics for applications in fermentation

Spiral magnetic order and pressure-induced superconductivity in transition metal compounds

Magnetic and superconducting ground states can compete, cooperate and coexist. MnP provides a compelling and potentially generalizable example of a material where superconductivity and magnetism may be intertwined. Using a synchrotron-based non-resonant X-ray magnetic diffraction technique, we reveal a spiral spin order in MnP and trace its pressure evolution towards superconducting order via measurements in a diamond anvil cell. Judging from the magnetostriction, ordered moments vanish at the quantum phase transition as pressure increases the electron kinetic energy. Spins remain local in the disordered phase, and the promotion of superconductivity is likely to emerge from an enhanced coupling to residual spiral spin fluctuations and their concomitant suppression of phonon-mediated superconductivity. As the pitch of the spiral order varies across the 3d transition metal compounds in the MnP family, the magnetic ground state switches between antiferromagnet and ferromagnet, providing an additional tuning parameter in probing spin-fluctuation-induced superconductivity

Spiral magnetic order and pressure-induced superconductivity in transition metal compounds

Magnetic and superconducting ground states can compete, cooperate and coexist. MnP provides a compelling and potentially generalizable example of a material where superconductivity and magnetism may be intertwined. Using a synchrotron-based non-resonant X-ray magnetic diffraction technique, we reveal a spiral spin order in MnP and trace its pressure evolution towards superconducting order via measurements in a diamond anvil cell. Judging from the magnetostriction, ordered moments vanish at the quantum phase transition as pressure increases the electron kinetic energy. Spins remain local in the disordered phase, and the promotion of superconductivity is likely to emerge from an enhanced coupling to residual spiral spin fluctuations and their concomitant suppression of phonon-mediated superconductivity. As the pitch of the spiral order varies across the 3d transition metal compounds in the MnP family, the magnetic ground state switches between antiferromagnet and ferromagnet, providing an additional tuning parameter in probing spin-fluctuation-induced superconductivity

Ectopic tissue engineered ligament with silk collagen scaffold for ACL regeneration: A preliminary study

Anterior cruciate ligament (ACL) reconstruction remains a formidable clinical challenge because of the lack of vascularization and adequate cell numbers in the joint cavity. In this study, we developed a novel strategy to mimic the early stage of repair in vivo, which recapitulated extra-articular inflammatory response to facilitate the early ingrowth of blood vessels and cells. A vascularized ectopic tissue engineered ligament (ETEL) with silk collagen scaffold was developed and then transferred to reconstruct the ACL in rabbits without interruption of perfusion. At 2 weeks after ACL reconstruction, more well-perfused cells and vessels were found in the regenerated ACL with ETEL, which decreased dramatically at the 4 and 12 week time points with collagen deposition and maturation. ACL treated with ETEL exhibited more mature ligament structure and enhanced ligament-bone healing post-reconstructive surgery at 4 and 12 weeks, as compared with the control group. In addition, the ETEL group was demonstrated to have higher modulus and stiffness than the control group significantly at 12 weeks post-reconstructive surgery. In conclusion, our results demonstrated that the ETEL can provide sufficient vascularity and cellularity during the early stages of healing, and subsequently promote ACL regeneration and ligament-bone healing, suggesting its clinic use as a promising therapeutic modality. Statement of Significance Early inflammatory cell infiltration, tissue and vessels ingrowth were significantly higher in the extra articular implanted scaffolds than theses in the joint cavity. By mimicking the early stages of wound repair, which provided extra-articular inflammatory stimulation to facilitate the early ingrowth of blood vessels and cells, a vascularized ectopic tissue engineered ligament (ETEL) with silk collagen scaffold was constructed by subcutaneous implantation for 2 weeks. The fully vascularized TE ligament was then transferred to rebuild ACL without blood perfusion interruption, and was demonstrated to exhibit improved ACL regeneration, bone tunnel healing and mechanical properties. (C) 2017 Published by Elsevier Ltd on behalf of Acta Materialia Inc